2QAG

Crystal structure of human septin trimer 2/6/7


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 0.392 
  • R-Value Work: 0.376 
  • R-Value Observed: 0.376 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structural insight into filament formation by mammalian septins.

Sirajuddin, M.Farkasovsky, M.Hauer, F.Kuhlmann, D.Macara, I.G.Weyand, M.Stark, H.Wittinghofer, A.

(2007) Nature 449: 311-315

  • DOI: https://doi.org/10.1038/nature06052
  • Primary Citation of Related Structures:  
    2QA5, 2QAG

  • PubMed Abstract: 

    Septins are GTP-binding proteins that assemble into homo- and hetero-oligomers and filaments. Although they have key roles in various cellular processes, little is known concerning the structure of septin subunits or the organization and polarity of septin complexes. Here we present the structures of the human SEPT2 G domain and the heterotrimeric human SEPT2-SEPT6-SEPT7 complex. The structures reveal a universal bipolar polymer building block, composed of an extended G domain, which forms oligomers and filaments by conserved interactions between adjacent nucleotide-binding sites and/or the amino- and carboxy-terminal extensions. Unexpectedly, X-ray crystallography and electron microscopy showed that the predicted coiled coils are not involved in or required for complex and/or filament formation. The asymmetrical heterotrimers associate head-to-head to form a hexameric unit that is nonpolarized along the filament axis but is rotationally asymmetrical. The architecture of septin filaments differs fundamentally from that of other cytoskeletal structures.


  • Organizational Affiliation

    Abteilung Strukturelle Biologie, Max-Planck-Institut für molekulare Physiologie, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Septin-2361Homo sapiensMutation(s): 0 
Gene Names: SEPT2DIFF6KIAA0158NEDD5
UniProt & NIH Common Fund Data Resources
Find proteins for Q15019 (Homo sapiens)
Explore Q15019 
Go to UniProtKB:  Q15019
PHAROS:  Q15019
GTEx:  ENSG00000168385 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15019
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Septin-6427Homo sapiensMutation(s): 0 
Gene Names: SEPT6KIAA0128SEP2
UniProt & NIH Common Fund Data Resources
Find proteins for Q14141 (Homo sapiens)
Explore Q14141 
Go to UniProtKB:  Q14141
PHAROS:  Q14141
GTEx:  ENSG00000125354 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14141
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Septin-7418Homo sapiensMutation(s): 0 
Gene Names: SEPT7CDC10
UniProt & NIH Common Fund Data Resources
Find proteins for Q16181 (Homo sapiens)
Explore Q16181 
Go to UniProtKB:  Q16181
PHAROS:  Q16181
GTEx:  ENSG00000122545 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16181
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 0.392 
  • R-Value Work: 0.376 
  • R-Value Observed: 0.376 
  • Space Group: P 43 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 252.515α = 90
b = 252.515β = 90
c = 156.485γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
SOLVEphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-08-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations