Download MendeleyCrystal structure of glucuronate isomerase from Bacillus halodurans complexed with Zn.
Fedorov, A.A., Fedorov, E.V., Patskovsky, Y., Toro, R., Sauder, J.M., Burley, S.K., Raushel, F.M., Almo, S.C.To be published.
2Q6E
Crystal structure of glucuronate isomerase from Bacillus halodurans complexed with Zn
- PDB DOI: https://doi.org/10.2210/pdb2Q6E/pdb
- Classification: ISOMERASE
- Organism(s): Halalkalibacterium halodurans C-125
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-06-05 Released: 2007-06-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.246
- R-Value Work: 0.231
- R-Value Observed: 0.231
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BH0493 protein | 427 | Halalkalibacterium halodurans C-125 | Mutation(s): 0 Gene Names: BH0493 |  | |
UniProt | |||||
Find proteins for Q9KFI6 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KFI6 Go to UniProtKB: Q9KFI6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KFI6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | D [auth A], F [auth B], G [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | H [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.246
- R-Value Work: 0.231
- R-Value Observed: 0.231
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 133.372 | α = 90 |
| b = 133.372 | β = 90 |
| c = 196.821 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| ADSC | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2007-06-19 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Patskovsky, Y., Toro, R., Sauder, J.M., Burley, S.K., Rauschel, F.M., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-06-19
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2023-08-30
Changes: Data collection, Database references, Refinement description
