Download MendeleyCrystal structure of uncharacterized protein (YP_323524.1) from Anabaena variabilis ATCC 29413 at 2.11 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2Q22
Crystal structure of uncharacterized protein (YP_323524.1) from Anabaena variabilis ATCC 29413 at 2.11 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2Q22/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Trichormus variabilis ATCC 29413
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-05-25 Released: 2007-06-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.222
- R-Value Work: 0.191
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 139 | Trichormus variabilis ATCC 29413 | Mutation(s): 4 Gene Names: YP_323524.1, Ava_3019 |  | |
UniProt | |||||
Find proteins for Q3M8Q7 (Trichormus variabilis (strain ATCC 29413 / PCC 7937)) Explore Q3M8Q7 Go to UniProtKB: Q3M8Q7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3M8Q7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | G [auth A], K [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | M [auth C], N [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | D [auth A], E [auth A], H [auth B], L [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | F [auth A], I [auth B], J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.222
- R-Value Work: 0.191
- R-Value Observed: 0.193
- Space Group: P 32
- Diffraction Data: https://doi.org/10.18430/M32Q22
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.374 | α = 90 |
| b = 103.374 | β = 90 |
| c = 42.086 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SOLVE | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Released Date: 2007-06-05 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-06-05
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2017-10-25
Changes: Author supporting evidence - Version 1.5: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.6: 2023-01-25
Changes: Database references, Derived calculations
