2PWJ

Structure of a mitochondrial type II peroxiredoxin from Pisum sativum

PDB DOI: https://doi.org/10.2210/pdb2PWJ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Pisum sativum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-05-11 Released: 2008-05-27
Deposition Author(s): Lopez-Jaramillo, F.J., Barranco-Medina, S., Lazaro, J.J., Santoyo-Gonzalez, F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.292
R-Value Work: 0.277
R-Value Observed: 0.298

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structure of a mitochondrial type II peroxiredoxin from Pisum sativum

Lopez-Jaramillo, F.J., Barranco-Medina, S., Lazaro, J.J., Santoyo-Gonzalez, F.

To be published.

Macromolecule Content

Total Structure Weight: 110.79 kDa
Atom Count: 7,476
Modelled Residue Count: 975
Deposited Residue Count: 1,026
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial peroxiredoxin	A, B, C, D, E A, B, C, D, E, F	171	Pisum sativum	Mutation(s): 0 Gene Names: prx EC: 1.11.1.15
UniProt
Find proteins for Q6KBB1 (Pisum sativum) Explore Q6KBB1 Go to UniProtKB: Q6KBB1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6KBB1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.292
R-Value Work: 0.277
R-Value Observed: 0.298
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.88	α = 102.94
b = 66.4	β = 104.44
c = 77.23	γ = 99.07

Software Package:

Software Name	Purpose
SAINT	data scaling
AMoRE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
PROTEUM PLUS	data collection
SAINT	data reduction
XPREP	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-05-27

Deposition Author(s):

Lopez-Jaramillo, F.J.

Barranco-Medina, S.

Santoyo-Gonzalez, F.

Revision History (Full details and data files)

Version 1.0: 2008-05-27
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.