Download MendeleyCrystal structure of uncharacterized protein (NP_599989.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 1.44 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2PR7
Crystal structure of uncharacterized protein (NP_599989.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 1.44 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2PR7/pdb
- Classification: HYDROLASE
- Organism(s): Corynebacterium glutamicum ATCC 13032
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-05-03 Released: 2007-05-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.44 Å
- R-Value Free: 0.199
- R-Value Work: 0.168
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Haloacid dehalogenase/epoxide hydrolase family | 137 | Corynebacterium glutamicum ATCC 13032 | Mutation(s): 2 Gene Names: NP_599989.1, cg0870 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | D [auth A], E [auth A], G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A], F [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.44 Å
- R-Value Free: 0.199
- R-Value Work: 0.168
- R-Value Observed: 0.170
- Space Group: P 1
- Diffraction Data: https://doi.org/10.18430/M32PR7
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 29.149 | α = 100.72 |
| b = 45.153 | β = 103.86 |
| c = 60.777 | γ = 103.31 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SHELX | phasing |
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-05-15 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-05-15
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
