Download MendeleyCrystal structure of MutT/nudix family protein from Streptococcus pneumoniae.
Chang, C., Binkowski, T.A., Zhou, M., Abdullah, J., Joachimiak, A.To be published.
2PQV
Crystal structure of MutT/nudix family protein from Streptococcus pneumoniae
- PDB DOI: https://doi.org/10.2210/pdb2PQV/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Streptococcus pneumoniae TIGR4
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-05-02 Released: 2007-06-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.226
- R-Value Work: 0.167
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MutT/nudix family protein | 154 | Streptococcus pneumoniae TIGR4 | Mutation(s): 2 Gene Names: SP_0119 |  | |
UniProt | |||||
Find proteins for A0A0H2UMZ7 (Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)) Explore A0A0H2UMZ7 Go to UniProtKB: A0A0H2UMZ7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2UMZ7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.226
- R-Value Work: 0.167
- R-Value Observed: 0.170
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.321 | α = 90 |
| b = 64.675 | β = 107.01 |
| c = 49.449 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2007-06-05 Deposition Author(s): Chang, C., Binkowski, T.A., Zhou, M., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-06-05
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
