2PH7

Crystal structure of AF2093 from Archaeoglobus fulgidus

PDB DOI: https://doi.org/10.2210/pdb2PH7/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Archaeoglobus fulgidus DSM 4304
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-04-10 Released: 2007-05-08
Deposition Author(s): Chang, J.C., Yang, H., Hwang, J., Zhu, J., Chen, L., Fu, Z.-Q., Xu, H., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.271
R-Value Work: 0.230
R-Value Observed: 0.232

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of AF2093 from Archaeoglobus fulgidus.

Chang, J.C., Yang, H., Hwang, J., Zhu, J., Chen, L., Fu, Z.-Q., Xu, H., Rose, J.P., Wang, B.-C.

To be published.

Macromolecule Content

Total Structure Weight: 57.94 kDa
Atom Count: 3,655
Modelled Residue Count: 439
Deposited Residue Count: 492
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein AF_2093	A, B	246	Archaeoglobus fulgidus DSM 4304	Mutation(s): 6 Gene Names: AF_2093
UniProt
Find proteins for O28187 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28187 Go to UniProtKB: O28187
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O28187
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.271
R-Value Work: 0.230
R-Value Observed: 0.232
Space Group: F 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 206.536	α = 90
b = 206.536	β = 90
c = 206.536	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SERGUI	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SGXPRO	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-05-08

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2007-05-08
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2018-01-24
Changes: Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.