Download MendeleyCrystal structure of acyl-CoA dehydrogenase from G. kaustophilus
Chen, L., Chen, L.-Q., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Zhao, M., Li, Y., Fu, Z.-Q., Rose, J.P., Wang, B.-C.To be published.
2PG0
Crystal structure of acyl-CoA dehydrogenase from Geobacillus kaustophilus
- PDB DOI: https://doi.org/10.2210/pdb2PG0/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Geobacillus kaustophilus HTA426
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-04-06 Released: 2007-05-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.226
- R-Value Work: 0.205
- R-Value Observed: 0.206
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acyl-CoA dehydrogenase | 385 | Geobacillus kaustophilus HTA426 | Mutation(s): 0 Gene Names: GK1316 EC: 1.3.99.3 |  | |
UniProt | |||||
Find proteins for Q5L0D5 (Geobacillus kaustophilus (strain HTA426)) Explore Q5L0D5 Go to UniProtKB: Q5L0D5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5L0D5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | C [auth A], D [auth B] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.226
- R-Value Work: 0.205
- R-Value Observed: 0.206
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 119.276 | α = 90 |
| b = 119.276 | β = 90 |
| c = 124.452 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SERGUI | data collection |
| HKL-2000 | data reduction |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2007-05-08 Deposition Author(s): Chen, L., Chen, L.-Q., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Zhao, M., Li, Y., Fu, Z.-Q., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-05-08
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2017-09-13
Changes: Refinement description - Version 1.4: 2018-01-24
Changes: Database references, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references, Derived calculations
