Download MendeleyCrystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5
Yamamoto, H., Kunishima, N.To be published.
2P6C
Crystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5.
- PDB DOI: https://doi.org/10.2210/pdb2P6C/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Aquifex aeolicus VF5
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-17 Released: 2007-09-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.200
- R-Value Work: 0.183
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| aq_2013 protein | 137 | Aquifex aeolicus VF5 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for O67812 (Aquifex aeolicus (strain VF5)) Explore O67812 Go to UniProtKB: O67812 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O67812 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A] D [auth A] E [auth A] F [auth B] G [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.200
- R-Value Work: 0.183
- R-Value Observed: 0.183
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.248 | α = 90 |
| b = 70.248 | β = 90 |
| c = 133.937 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CrystalClear | data collection |
| MOLREP | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2007-09-18 Deposition Author(s): Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-09-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
