Download MendeleyCrystal structure of a putative xylanase from Bacteroides fragilis
Bonanno, J.B., Freeman, J., Bain, K.T., Zhang, F., Sridhar, V., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
2P1G
Crystal structure of a putative xylanase from Bacteroides fragilis
- PDB DOI: https://doi.org/10.2210/pdb2P1G/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Bacteroides fragilis YCH46
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-03-05 Released: 2007-03-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.214
- R-Value Work: 0.167
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.7 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative xylanase | 249 | Bacteroides fragilis YCH46 | Mutation(s): 0 Gene Names: BF2036 |  | |
UniProt | |||||
Find proteins for Q64UP6 (Bacteroides fragilis (strain YCH46)) Explore Q64UP6 Go to UniProtKB: Q64UP6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q64UP6 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.214
- R-Value Work: 0.167
- R-Value Observed: 0.169
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.645 | α = 90 |
| b = 65.83 | β = 103.84 |
| c = 74.061 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2007-03-20 Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Zhang, F., Sridhar, V., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-03-20
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2012-10-24
Changes: Structure summary - Version 1.4: 2017-10-18
Changes: Refinement description - Version 1.5: 2018-11-14
Changes: Data collection, Structure summary - Version 1.6: 2021-02-03
Changes: Database references, Structure summary - Version 1.7: 2024-02-21
Changes: Data collection, Database references
