Download MendeleyStructure of YhfZ from Shigella flexneri
Kim, Y., Borovilos, M., Clancy, S., Joachimiak, A.To be published.
2OZZ
Crystal structure of YhfZ from Shigella flexneri
- PDB DOI: https://doi.org/10.2210/pdb2OZZ/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Shigella flexneri 2a
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2007-02-28 Released: 2007-03-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.288
- R-Value Work: 0.222
- R-Value Observed: 0.229
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein yhfZ | 231 | Shigella flexneri 2a | Mutation(s): 7 Gene Names: yhfZ, SF3401, S_4361 |  | |
UniProt | |||||
Find proteins for A0A0H2V277 (Shigella flexneri) Explore A0A0H2V277 Go to UniProtKB: A0A0H2V277 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2V277 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.288
- R-Value Work: 0.222
- R-Value Observed: 0.229
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.27 | α = 90 |
| b = 62.55 | β = 90 |
| c = 170.192 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXCD | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2007-03-27 Deposition Author(s): Kim, Y., Borovilos, M., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-03-27
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description
