Download MendeleyCrystal structure of putative mandelate racemase from Mesorhizobium loti
Bonanno, J.B., Freeman, J., Bain, K.T., Wu, B., Sridhar, V., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
2OZ8
Crystal structure of putative mandelate racemase from Mesorhizobium loti
- PDB DOI: https://doi.org/10.2210/pdb2OZ8/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Mesorhizobium japonicum MAFF 303099
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-02-25 Released: 2007-03-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.48 Å
- R-Value Free: 0.229
- R-Value Work: 0.174
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.7 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mll7089 protein | 389 | Mesorhizobium japonicum MAFF 303099 | Mutation(s): 0 Gene Names: mll7089 |  | |
UniProt | |||||
Find proteins for Q987E0 (Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)) Explore Q987E0 Go to UniProtKB: Q987E0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q987E0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] D [auth A] E [auth A] F [auth B] G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.48 Å
- R-Value Free: 0.229
- R-Value Work: 0.174
- R-Value Observed: 0.177
- Space Group: P 4 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 160.176 | α = 90 |
| b = 160.176 | β = 90 |
| c = 82.56 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2007-03-13 Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Wu, B., Sridhar, V., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-03-13
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2012-10-24
Changes: Structure summary - Version 1.4: 2017-10-18
Changes: Refinement description - Version 1.5: 2018-11-14
Changes: Data collection, Structure summary - Version 1.6: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.7: 2024-02-21
Changes: Data collection, Database references
