Download MendeleyCrystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.
Shumilin, I.A., Skarina, T., Onopriyenko, O., Yim, V., Chruszcz, M., Cymborowski, M., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.To be published.
2OFY
Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.
- PDB DOI: https://doi.org/10.2210/pdb2OFY/pdb
- Classification: TRANSCRIPTION
- Organism(s): Rhodococcus jostii RHA1
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-01-04 Released: 2007-01-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.239
- R-Value Work: 0.204
- R-Value Observed: 0.205
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative XRE-family transcriptional regulator | 86 | Rhodococcus jostii RHA1 | Mutation(s): 3 Gene Names: RHA1_ro04071 |  | |
UniProt | |||||
Find proteins for Q0S9B8 (Rhodococcus jostii (strain RHA1)) Explore Q0S9B8 Go to UniProtKB: Q0S9B8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0S9B8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.239
- R-Value Work: 0.204
- R-Value Observed: 0.205
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.54 | α = 90 |
| b = 46.073 | β = 90 |
| c = 81.842 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| O | model building |
| ARP/wARP | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2007-01-16 Deposition Author(s): Shumilin, I.A., Skarina, T., Onopriyenko, O., Yim, V., Chruszcz, M., Cymborowski, M., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-01-16
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2023-12-27
Changes: Data collection
