Download MendeleyCrystal structure of Protein of unknown function DUF1611 (YP_324013.1) from Anabaena variabilis ATCC 29413 at 2.30 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2OBN
Crystal structure of a duf1611 family protein (ava_3511) from anabaena variabilis atcc 29413 at 2.30 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2OBN/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Trichormus variabilis ATCC 29413
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-12-19 Released: 2007-01-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.214
- R-Value Work: 0.175
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein | 349 | Trichormus variabilis ATCC 29413 | Mutation(s): 10 Gene Names: YP_324013.1 |  | |
UniProt | |||||
Find proteins for Q3M7B8 (Trichormus variabilis (strain ATCC 29413 / PCC 7937)) Explore Q3M7B8 Go to UniProtKB: Q3M7B8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3M7B8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | F [auth A], H [auth B], J [auth C], L [auth D] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | E [auth A], G [auth B], I [auth C], K [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.214
- R-Value Work: 0.175
- R-Value Observed: 0.177
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M32OBN
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.09 | α = 90 |
| b = 123.07 | β = 103.1 |
| c = 75.21 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SHELX | phasing |
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-01-16 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-01-16
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2021-10-20
Changes: Database references, Derived calculations - Version 1.5: 2023-01-25
Changes: Database references
