2O9O
Crystal Structure of the buffalo Secretory Signalling Glycoprotein at 2.8 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2O9O/pdb
- Entry: 2O9O supersedes: 1SV8
- Classification: SIGNALING PROTEIN
- Organism(s): Bubalus bubalis
- Mutation(s): No
- Deposited: 2006-12-14 Released: 2007-01-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.236
- R-Value Work: 0.186
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chitinase-3-like protein 1 | 361 | Bubalus bubalis | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q7YS85 (Bubalus bubalis) Explore Q7YS85 Go to UniProtKB: Q7YS85 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7YS85 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 5 |  | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan: G21381MC GlyCosmos: G21381MC GlyGen: G21381MC | |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.236
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.1 | α = 90 |
| b = 66.859 | β = 90 |
| c = 108.543 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345 | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2007-01-02 Deposition Author(s): Ethayathulla, A.S., Srivastava, D.B., Kumar, J., Sharma, S., Kaur, P., Singh, T.P.
- This entry supersedes: 1SV8
Revision History (Full details and data files)
- Version 1.0: 2007-01-02
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary
