Download MendeleyCrystal structure of BH3976 (10176601) from Bacillus halodurans at 1.95 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2O4T
CRYSTAL STRUCTURE OF a protein of the DUF1048 family with a left-handed superhelix fold (BH3976) FROM BACILLUS HALODURANS AT 1.95 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb2O4T/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Halalkalibacterium halodurans
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-12-04 Released: 2006-12-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.255
- R-Value Work: 0.203
- R-Value Observed: 0.205
wwPDB Validation 3D Report Full Report
This is version 1.7 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BH3976 protein | 100 | Halalkalibacterium halodurans | Mutation(s): 2 Gene Names: 10176601 |  | |
UniProt | |||||
Find proteins for Q9K5W1 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9K5W1 Go to UniProtKB: Q9K5W1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9K5W1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | B [auth A], C [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.255
- R-Value Work: 0.203
- R-Value Observed: 0.205
- Space Group: H 3 2
- Diffraction Data: https://doi.org/10.18430/M32O4T
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 85.577 | α = 90 |
| b = 85.577 | β = 90 |
| c = 104.575 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-12-26 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-12-26
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2017-10-25
Changes: Author supporting evidence - Version 1.5: 2023-01-25
Changes: Database references, Derived calculations - Version 1.6: 2023-09-20
Changes: Data collection, Refinement description - Version 1.7: 2023-11-15
Changes: Data collection
