2O28
Crystal Structure of GNPNAT1
- PDB DOI: https://doi.org/10.2210/pdb2O28/pdb
- Entry: 2O28 supersedes: 2HV0
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2006-11-29 Released: 2006-12-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.237 
- R-Value Work: 0.186 
- R-Value Observed: 0.189 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glucosamine 6-phosphate N-acetyltransferase | 184 | Homo sapiens | Mutation(s): 0  Gene Names: GNPNAT1, GNA1 EC: 2.3.1.4 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96EK6 (Homo sapiens) Explore Q96EK6  Go to UniProtKB:  Q96EK6 | |||||
PHAROS:  Q96EK6 GTEx:  ENSG00000100522  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96EK6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
COA Query on COA | D [auth A], E [auth B] | COENZYME A C21 H36 N7 O16 P3 S RGJOEKWQDUBAIZ-IBOSZNHHSA-N | |||
16G Query on 16G | C [auth A] | 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose C8 H16 N O9 P BRGMHAYQAZFZDJ-PVFLNQBWSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.237 
- R-Value Work: 0.186 
- R-Value Observed: 0.189 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.187 | α = 90 |
b = 63.765 | β = 91.81 |
c = 64.742 | γ = 90 |
Software Name | Purpose |
---|---|
MOLREP | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2006-12-12  Deposition Author(s): Min, J., Wu, H., Zeng, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)
- This entry supersedes: 2HV0
Revision History (Full details and data files)
- Version 1.0: 2006-12-12
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Structure summary - Version 1.4: 2023-12-27
Changes: Data collection, Database references, Structure summary