Download MendeleyX-ray crystal structure of carbohydrate kinase from Agrobacterium tumefaciens
Osipiuk, J., Xu, X., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
2NWH
Carbohydrate kinase from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb2NWH/pdb
- Classification: SIGNALING PROTEIN,TRANSFERASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-11-14 Released: 2006-12-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.233
- R-Value Work: 0.194
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| carbohydrate kinase | 317 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: Atu1875 |  | |
UniProt | |||||
Find proteins for A9CII5 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CII5 Go to UniProtKB: A9CII5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CII5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A], C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.233
- R-Value Work: 0.194
- R-Value Observed: 0.197
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.93 | α = 90 |
| b = 75.93 | β = 90 |
| c = 103.608 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| SOLVE | phasing |
| RESOLVE | model building |
| HKL-2000 | data scaling |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-3000 | phasing |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2006-12-12 Deposition Author(s): Osipiuk, J., Xu, X., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-12-12
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations
