Download MendeleyCrystal structure of hypothetical protein APE2225 from Aeropyrum pernix K1
Jin, X., Bera, A., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Shapiro, L.To be published.
2NS9
Crystal structure of protein APE2225 from Aeropyrum pernix K1, Pfam COXG
- PDB DOI: https://doi.org/10.2210/pdb2NS9/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Aeropyrum pernix
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-11-03 Released: 2006-11-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.278
- R-Value Work: 0.217
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein APE2225 | 157 | Aeropyrum pernix | Mutation(s): 0 Gene Names: APE2225 |  | |
UniProt | |||||
Find proteins for Q9Y9R3 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9Y9R3 Go to UniProtKB: Q9Y9R3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y9R3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A], D [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.278
- R-Value Work: 0.217
- R-Value Observed: 0.220
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.73 | α = 90 |
| b = 33.082 | β = 121.4 |
| c = 78.442 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| ADSC | data collection |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SHELXS | phasing |
Entry History
Deposition Data
- Released Date: 2006-11-14 Deposition Author(s): Jin, X., Bera, A., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Shapiro, L., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-11-14
Type: Initial release - Version 1.1: 2007-10-16
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2023-12-27
Changes: Data collection, Database references
