Download MendeleyThe crystal structure of putative secretion activator protein from Porphyromonas gingivalis W83
Tan, K., Bigelow, L., Gu, M., Joachimiak, A.To be published.
2NR7
Structural Genomics, the crystal structure of putative secretion activator protein from Porphyromonas gingivalis W83
- PDB DOI: https://doi.org/10.2210/pdb2NR7/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Porphyromonas gingivalis W83
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2006-11-01 Released: 2006-12-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.197
- R-Value Work: 0.162
- R-Value Observed: 0.164
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Secretion activator protein, putative | 195 | Porphyromonas gingivalis W83 | Mutation(s): 1 |  | |
UniProt | |||||
Find proteins for Q7MXB3 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83)) Explore Q7MXB3 Go to UniProtKB: Q7MXB3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7MXB3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.197
- R-Value Work: 0.162
- R-Value Observed: 0.164
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.537 | α = 90 |
| b = 36.386 | β = 119.75 |
| c = 62.474 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2006-12-05 Deposition Author(s): Tan, K., Bigelow, L., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-12-05
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations
