Download MendeleyCrystal structure of alkaline thermophlic xylanase from Bacillus sp. (NCL 86-6-10) with complex xylotriose: Xylotriose cleaved to xylobiose and xylose
Satyanarayana, L., Gaikwad, S.M., Balakrishnan, H., Suresh, C.G.To be published.
2NQY
Crystal structure of alkaline thermophlic xylanase from Bacillus sp. (NCL 86-6-10) with complex xylotriose: Xylotriose cleaved to xylobiose and xylose
- PDB DOI: https://doi.org/10.2210/pdb2NQY/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus sp. (in: firmicutes)
- Mutation(s): No
- Deposited: 2006-11-01 Released: 2007-11-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.243
- R-Value Work: 0.192
- R-Value Observed: 0.194
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FAMILY 11 XYLANASE | 206 | Bacillus sp. (in: firmicutes) | Mutation(s): 0 EC: 3.2.1.8 |  | |
UniProt | |||||
Find proteins for Q7SIE3 (Salipaludibacillus agaradhaerens) Explore Q7SIE3 Go to UniProtKB: Q7SIE3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7SIE3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| XYP Query on XYP | E [auth A], F [auth B] | beta-D-xylopyranose C5 H10 O5 SRBFZHDQGSBBOR-KKQCNMDGSA-N |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900116 Query on PRD_900116 | C, D | 4beta-beta-xylobiose | Oligosaccharide / Metabolism |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.243
- R-Value Work: 0.192
- R-Value Observed: 0.194
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.363 | α = 90 |
| b = 78.363 | β = 90 |
| c = 140.84 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystalClear | data collection |
| DENZO | data reduction |
| HKL-2000 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2007-11-06 Deposition Author(s): Satyanarayana, L., Gaikwad, S.M., Balakrishnan, H., Suresh, C.G.
Revision History (Full details and data files)
- Version 1.0: 2007-11-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-12-20
Changes: Advisory, Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary
