Download MendeleySite-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models.
Hwang, W.C., Golden, J.W., Pascual, J., Xu, D., Cheltsov, A., Godzik, A.(2014) Proteins
2NLV
CRYSTAL STRUCTURE OF A XISI-LIKE PROTEIN (AVA_3825) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.30 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb2NLV/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Trichormus variabilis ATCC 29413
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-10-20 Released: 2006-12-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.195
- R-Value Work: 0.175
- R-Value Observed: 0.176
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| XisI protein-like | 112 | Trichormus variabilis ATCC 29413 | Mutation(s): 0 Gene Names: YP_324325.1 |  | |
UniProt | |||||
Find proteins for Q3M6F6 (Trichormus variabilis (strain ATCC 29413 / PCC 7937)) Explore Q3M6F6 Go to UniProtKB: Q3M6F6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3M6F6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth A], D [auth A], E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.195
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M32NLV
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.779 | α = 90 |
| b = 37.354 | β = 97.22 |
| c = 63.453 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2006-12-05 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-12-05
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2014-09-10
Changes: Database references, Other, Structure summary - Version 1.4: 2014-09-24
Changes: Database references - Version 1.5: 2017-10-18
Changes: Advisory, Refinement description - Version 1.6: 2023-01-25
Changes: Advisory, Database references, Derived calculations
