2M97

Optimized Ratiometric Calcium Sensors For Functional In Vivo Imaging of Neurons and T-Lymphocytes


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 3000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.

Thestrup, T.Litzlbauer, J.Bartholomaus, I.Mues, M.Russo, L.Dana, H.Kovalchuk, Y.Liang, Y.Kalamakis, G.Laukat, Y.Becker, S.Witte, G.Geiger, A.Allen, T.Rome, L.C.Chen, T.W.Kim, D.S.Garaschuk, O.Griesinger, C.Griesbeck, O.

(2014) Nat Methods 11: 175-182

  • DOI: https://doi.org/10.1038/nmeth.2773
  • Primary Citation of Related Structures:  
    2M97

  • PubMed Abstract: 

    The quality of genetically encoded calcium indicators (GECIs) has improved dramatically in recent years, but high-performing ratiometric indicators are still rare. Here we describe a series of fluorescence resonance energy transfer (FRET)-based calcium biosensors with a reduced number of calcium binding sites per sensor. These 'Twitch' sensors are based on the C-terminal domain of Opsanus troponin C. Their FRET responses were optimized by a large-scale functional screen in bacterial colonies, refined by a secondary screen in rat hippocampal neuron cultures. We tested the in vivo performance of the most sensitive variants in the brain and lymph nodes of mice. The sensitivity of the Twitch sensors matched that of synthetic calcium dyes and allowed visualization of tonic action potential firing in neurons and high resolution functional tracking of T lymphocytes. Given their ratiometric readout, their brightness, large dynamic range and linear response properties, Twitch sensors represent versatile tools for neuroscience and immunology.


  • Organizational Affiliation

    1] Max Planck Institute of Neurobiology, Martinsried, Germany. [2] Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Optimized Ratiometric Calcium Sensor69Opsanus tauMutation(s): 0 
UniProt
Find proteins for W5IDB2 (Opsanus tau)
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Go to UniProtKB:  W5IDB2
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UniProt GroupW5IDB2
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 3000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-01
    Type: Initial release
  • Version 1.1: 2014-02-05
    Changes: Database references
  • Version 1.2: 2014-02-12
    Changes: Database references