Download MendeleyStructural Characterisation of Btrk Decarboxylase from Bacillus Circulans Butirosin Biosynthesis
Popovic, B., Li, Y., Chirgadze, D.Y., Blundell, T.L., Spencer, J.B.To be published.
2J66
Structural characterisation of BtrK decarboxylase from butirosin biosynthesis
- PDB DOI: https://doi.org/10.2210/pdb2J66/pdb
- Classification: LYASE
- Organism(s): Niallia circulans
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-09-26 Released: 2006-09-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.224
- R-Value Work: 0.213
- R-Value Observed: 0.213
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BTRK | 428 | Niallia circulans | Mutation(s): 0 EC: 4.1 |  | |
UniProt | |||||
Find proteins for Q2L4H3 (Niallia circulans) Explore Q2L4H3 Go to UniProtKB: Q2L4H3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2L4H3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.224
- R-Value Work: 0.213
- R-Value Observed: 0.213
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.604 | α = 90 |
| b = 128.814 | β = 90 |
| c = 45.323 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2006-09-28 Deposition Author(s): Popovic, B., Li, Y., Chirgadze, D.Y., Blundell, T.L., Spencer, J.B.
Revision History (Full details and data files)
- Version 1.0: 2006-09-28
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Refinement description
