2J5W
Ceruloplasmin revisited: structural and functional roles of various metal cation binding sites
- PDB DOI: https://doi.org/10.2210/pdb2J5W/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 2006-09-19 Released: 2007-02-06 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.226 
- R-Value Work: 0.175 
- R-Value Observed: 0.177 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
CERULOPLASMIN | 1,065 | Homo sapiens | Mutation(s): 0  EC: 1.16.3.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00450 (Homo sapiens) Explore P00450  Go to UniProtKB:  P00450 | |||||
PHAROS:  P00450 GTEx:  ENSG00000047457  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00450 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 7 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | O [auth A], P [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GOL Query on GOL | Q [auth A], R [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CU Query on CU | F [auth A] G [auth A] H [auth A] I [auth A] K [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
OXY Query on OXY | N [auth A] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N | |||
NA Query on NA | C [auth A], D [auth A], E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | |||
O Query on O | J [auth A] | OXYGEN ATOM O XLYOFNOQVPJJNP-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.226 
- R-Value Work: 0.175 
- R-Value Observed: 0.177 
- Space Group: P 32 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 209.14 | α = 90 |
b = 209.139 | β = 90 |
c = 82.752 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2007-02-06  Deposition Author(s): Bento, I., Peixoto, C., Zaitsev, V.N., Lindley, P.F.
Revision History (Full details and data files)
- Version 1.0: 2007-02-06
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Other, Structure summary - Version 1.4: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary