Download MendeleyThe 1.7 A crystal structure of a hypothetical protein NMB1012 from Neisseria meningitidis
Zhang, R., Li, H., Bargassa, M., Joachimiak, A.To be published.
2IKB
Crystal Structure of a Protein of Unknown Function NMB1012 from Neisseria meningitidis
- PDB DOI: https://doi.org/10.2210/pdb2IKB/pdb
- Classification: Structural genomics, unknown function
- Organism(s): Neisseria meningitidis MC58
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2006-10-02 Released: 2006-11-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.247
- R-Value Work: 0.195
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein NMB1012 | 167 | Neisseria meningitidis MC58 | Mutation(s): 5 |  | |
UniProt | |||||
Find proteins for Q7DDI9 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q7DDI9 Go to UniProtKB: Q7DDI9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7DDI9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.247
- R-Value Work: 0.195
- R-Value Observed: 0.197
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.335 | α = 90 |
| b = 52.087 | β = 90.68 |
| c = 128.874 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXE | model building |
| SOLVE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2006-11-21 Deposition Author(s): Zhang, R., Li, H., Bargassa, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-11-21
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Refinement description, Source and taxonomy, Version format compliance
