2ID3
Crystal structure of transcriptional regulator SCO5951 from Streptomyces coelicolor A3(2)
- PDB DOI: https://doi.org/10.2210/pdb2ID3/pdb
- Classification: TRANSCRIPTION
- Organism(s): Streptomyces coelicolor
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-09-14 Released: 2006-10-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.199
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative transcriptional regulator | 225 | Streptomyces coelicolor | Mutation(s): 0 Gene Names: SCO5951 |  | |
UniProt | |||||
Find proteins for O54180 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore O54180 Go to UniProtKB: O54180 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O54180 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A] D [auth A] E [auth A] H [auth B] I [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A], G [auth A], M [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.199
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.069 | α = 90 |
| b = 85.617 | β = 90 |
| c = 126.341 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| O | model building |
| SOLVE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| CCP4 | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2006-10-17 Deposition Author(s): Grabowski, M., Chruszcz, M., Koclega, K.D., Cymborowski, M., Gu, J., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-10-17
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
