Download MendeleyCrystal structure of Yersinia protein tyrosine phosphatase complexed with vanadate, a transition state analogue
Vijayalakshmi, J., Saper, M.A.To be published.
2I42
Crystal structure of Yersinia protein tyrosine phosphatase complexed with vanadate, a transition state analogue
- PDB DOI: https://doi.org/10.2210/pdb2I42/pdb
- Classification: HYDROLASE
- Organism(s): Yersinia enterocolitica
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-08-21 Released: 2006-09-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Work: 0.170
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein phosphatase | 306 | Yersinia enterocolitica | Mutation(s): 0 Gene Names: yopH, yop51 EC: 3.1.3.48 |  | |
UniProt | |||||
Find proteins for P15273 (Yersinia enterocolitica) Explore P15273 Go to UniProtKB: P15273 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P15273 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| VO4 Query on VO4 | B [auth A] | VANADATE ION O4 V LSGOVYNHVSXFFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Work: 0.170
- R-Value Observed: 0.170
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.39 | α = 90 |
| b = 49.66 | β = 90 |
| c = 100.39 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| MADNESS | data collection |
| XSCALE | data scaling |
| X-PLOR | refinement |
Entry History
Deposition Data
- Released Date: 2006-09-19 Deposition Author(s): Vijayalakshmi, J., Saper, M.A.
Revision History (Full details and data files)
- Version 1.0: 2006-09-19
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2013-05-29
Changes: Non-polymer description - Version 1.4: 2017-10-18
Changes: Advisory, Refinement description - Version 1.5: 2023-08-30
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description
