Download MendeleyCrystal Structure of a putative HTH-type transcription regulator ytcD
Madegowda, M., Eswaramoorthy, S., Desigan, K., Burley, S.K., Swaminathan, S.To be published.
2HZT
Crystal Structure of a putative HTH-type transcriptional regulator ytcD
- PDB DOI: https://doi.org/10.2210/pdb2HZT/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-08-09 Released: 2006-08-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.282
- R-Value Work: 0.236
- R-Value Observed: 0.236
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative HTH-type transcriptional regulator ytcD | 107 | Bacillus subtilis | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for O34533 (Bacillus subtilis (strain 168)) Explore O34533 Go to UniProtKB: O34533 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O34533 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSU Query on CSU | A, B, C, D | L-PEPTIDE LINKING | C3 H7 N O5 S2 |  | CYS |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.282
- R-Value Work: 0.236
- R-Value Observed: 0.236
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.273 | α = 90 |
| b = 45.521 | β = 90 |
| c = 230.276 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2006-08-29 Deposition Author(s): Madegowda, M., Eswaramoorthy, S., Desigan, K., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-08-29
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2012-12-05
Changes: Database references - Version 1.4: 2017-09-13
Changes: Refinement description - Version 1.5: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
