Download MendeleyCrystal Structure of ORF 1438 a putative Glucose/ ribitol dehydrogenase from Clostridium thermocellum
Li, Y., Shaw, N., Xu, H., Cheng, C., Chen, L., Liu, Z.J., ROSE, J.P., WANG, B.C., Southeast Collaboratory for Structural GenomicsTo be published.
2HQ1
Crystal Structure of ORF 1438 a putative Glucose/ribitol dehydrogenase from Clostridium thermocellum
- PDB DOI: https://doi.org/10.2210/pdb2HQ1/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Acetivibrio thermocellus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-07-18 Released: 2006-09-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.249
- R-Value Work: 0.232
- R-Value Observed: 0.233
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glucose/ribitol dehydrogenase | 247 | Acetivibrio thermocellus | Mutation(s): 0 EC: 1.1.1.62 |  | |
UniProt | |||||
Find proteins for A3DDY9 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)) Explore A3DDY9 Go to UniProtKB: A3DDY9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A3DDY9 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.249
- R-Value Work: 0.232
- R-Value Observed: 0.233
- Space Group: C 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.982 | α = 90 |
| b = 99.487 | β = 90 |
| c = 69.833 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CCP4 | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2006-09-12 Deposition Author(s): Southeast Collaboratory for Structural Genomics (SECSG), Li, Y., Shaw, N., Xu, H., Cheng, C., Chen, L., Liu, Z.J., Rose, J.P., Wang, B.C.
Revision History (Full details and data files)
- Version 1.0: 2006-09-12
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-01-24
Changes: Database references - Version 1.4: 2023-08-30
Changes: Data collection, Database references, Refinement description
