2H6F
Protein Farnesyltransferase Complexed with a Farnesylated DDPTASACVLS Peptide Product at 1.5A Resolution
- PDB DOI: https://doi.org/10.2210/pdb2H6F/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2006-05-31 Released: 2006-08-29 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.203 
- R-Value Work: 0.190 
- R-Value Observed: 0.190 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit | 382 | Homo sapiens | Mutation(s): 0  Gene Names: FNTA EC: 2.5.1.58 (PDB Primary Data), 2.5.1.59 (PDB Primary Data) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P49354 (Homo sapiens) Explore P49354  Go to UniProtKB:  P49354 | |||||
PHAROS:  P49354 GTEx:  ENSG00000168522  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49354 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein farnesyltransferase beta subunit | 437 | Homo sapiens | Mutation(s): 0  Gene Names: FNTB EC: 2.5.1.58 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P49356 (Homo sapiens) Explore P49356  Go to UniProtKB:  P49356 | |||||
PHAROS:  P49356 GTEx:  ENSG00000257365  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49356 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
farnesylated peptide | C [auth P] | 11 | N/A | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FAR Query on FAR | K [auth P] | FARNESYL C15 H26 JXBSHSBNOVLGHF-BUJBXKITSA-N | |||
ZN Query on ZN | H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
ACY Query on ACY | E [auth A], F [auth A], G [auth A], I [auth B], J [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 4 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900003 Query on PRD_900003 | D [auth C] | sucrose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.203 
- R-Value Work: 0.190 
- R-Value Observed: 0.190 
- Space Group: P 61
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 178.572 | α = 90 |
b = 178.572 | β = 90 |
c = 64.66 | γ = 120 |
Software Name | Purpose |
---|---|
ADSC | data collection |
HKL-2000 | data reduction |
CNS | refinement |
HKL-2000 | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2006-08-29  Deposition Author(s): Terry, K.L., Beese, L.S.
Revision History (Full details and data files)
- Version 1.0: 2006-08-29
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-08-30
Changes: Data collection, Database references, Refinement description, Structure summary