Download MendeleyCrystal structure of hypothetical protein PG_1108 from Porphyromonas gingivalis W83
Nocek, B., Bigelow, L., Moy, S., Joachimiak, A.To be published.
2H5N
Crystal Structure of Protein of Unknown Function PG1108 from Porphyromonas gingivalis W83
- PDB DOI: https://doi.org/10.2210/pdb2H5N/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Porphyromonas gingivalis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-05-26 Released: 2006-07-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.244
- R-Value Work: 0.188
- R-Value Observed: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein PG_1108 | 133 | Porphyromonas gingivalis | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q7MVF6 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83)) Explore Q7MVF6 Go to UniProtKB: Q7MVF6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7MVF6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | E [auth A], F [auth B], G [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.244
- R-Value Work: 0.188
- R-Value Observed: 0.191
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.961 | α = 90 |
| b = 84.826 | β = 90 |
| c = 164.535 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2006-07-25 Deposition Author(s): Nocek, B., Bigelow, L., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-07-25
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations, Refinement description
