2H4U

Crystal Structure of Human Thioesterase Superfamily Member 2

PDB DOI: https://doi.org/10.2210/pdb2H4U/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-05-25 Released: 2006-06-20
Deposition Author(s): Ogg, D.J., Uppenberg, J., Arrowsmith, C., Berglund, H., Edwards, A., Ehn, M., Grasslund, S., Flodin, S., Hammerstrom, M., Hogbom, M., Holmberg-Schiavone, L., Kotenyova, T., Nilsson-Ehle, P., Nordlund, P., Nyman, T., Persson, C., Sagemark, J., Sundstrom, M., Thorsell, A.-G., Weigelt, J., Hallberg, M., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.272
R-Value Work: 0.217
R-Value Observed: 0.220

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The crystal structure of human thioesterase superfamily member 2

Ogg, D.J., Uppenberg, J., Arrowsmith, C., Berglund, H., Edwards, A., Ehn, M., Grasslund, S., Flodin, S., Hammerstrom, M., Hogbom, M., Holmberg-Schiavone, L., Kotenyova, T., Nilsson-Ehle, P., Nordlund, P., Nyman, T., Persson, C., Sagemark, J., Sundstrom, M., Thorsell, A.-G., Weigelt, J., Hallberg, M.

To be published.

Macromolecule Content

Total Structure Weight: 62.64 kDa
Atom Count: 3,873
Modelled Residue Count: 493
Deposited Residue Count: 580
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioesterase superfamily member 2	A, B, C, D	145	Homo sapiens	Mutation(s): 0 EC: 3.1.2.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NPJ3 (Homo sapiens) Explore Q9NPJ3 Go to UniProtKB: Q9NPJ3
PHAROS: Q9NPJ3 GTEx: ENSG00000112304
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9NPJ3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.272
R-Value Work: 0.217
R-Value Observed: 0.220
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.05	α = 90
b = 90.97	β = 90
c = 114.4	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
ADSC	data collection
XDS	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-06-20

Deposition Author(s):

Holmberg-Schiavone, L.

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2006-06-20
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description, Structure summary

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Help and Resources

2H4U

Crystal Structure of Human Thioesterase Superfamily Member 2

The crystal structure of human thioesterase superfamily member 2

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)