2H09

Crystal structure of diphtheria toxin repressor like protein from E. coli

PDB DOI: https://doi.org/10.2210/pdb2H09/pdb

Classification: TRANSCRIPTION
Organism(s): Escherichia coli
Mutation(s): No

Deposited: 2006-05-14 Released: 2007-05-15
Deposition Author(s): Kumarevel, T.S., Tanaka, T., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.258
R-Value Work: 0.238
R-Value Observed: 0.238

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the manganese transport regulatory protein from Escherichia coli.

Tanaka, T., Shinkai, A., Bessho, Y., Kumarevel, T.S., Yokoyama, S.

(2009) Proteins

PubMed: 19701940 Search on PubMed
DOI: https://doi.org/10.1002/prot.22541
Primary Citation of Related Structures:
2H09

Organizational Affiliation

Advanced Photon Technology Division, RIKEN SPring-8 Center, Harima Institute, Hyogo 679-5148, Japan.

Macromolecule Content

Total Structure Weight: 17.67 kDa
Atom Count: 1,101
Modelled Residue Count: 127
Deposited Residue Count: 155
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator mntR	A	155	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A9F1 (Escherichia coli (strain K12)) Explore P0A9F1 Go to UniProtKB: P0A9F1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A9F1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.258
R-Value Work: 0.238
R-Value Observed: 0.238
Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.76	α = 90
b = 75.76	β = 90
c = 41.8	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
CCP4	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-05-15

Deposition Author(s):

Kumarevel, T.S.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-05-15
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.