Download MendeleyThe Crystal Structure of Human chromodomain Y-like Protein.
Antoshenko, T., Min, J., Wu, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N.To be published.
2GTR
Human chromodomain Y-like protein
- PDB DOI: https://doi.org/10.2210/pdb2GTR/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-04-28 Released: 2006-05-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.233
- R-Value Work: 0.189
- R-Value Observed: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chromodomain Y-like protein | 261 | Homo sapiens | Mutation(s): 0 Gene Names: CDYL, CDYL1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y232 (Homo sapiens) Explore Q9Y232 Go to UniProtKB: Q9Y232 | |||||
PHAROS: Q9Y232 GTEx: ENSG00000153046 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y232 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.233
- R-Value Work: 0.189
- R-Value Observed: 0.191
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.207 | α = 90 |
| b = 132.739 | β = 102.92 |
| c = 100.361 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystalClear | data reduction |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-05-09 Deposition Author(s): Min, J., Wu, H., Antoshenko, T., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2006-05-09
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description
