Download MendeleyCrystal structure of DNA polymerase III, gamma subunit-related protein (tm0771) from Thermotoga maritima at 2.00 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2GNO
Crystal structure of a dna polymerase iii, gamma subunit-related protein (tm0771) from thermotoga maritima msb8 at 2.00 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2GNO/pdb
- Classification: REPLICATION
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-04-10 Released: 2006-04-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.278
- R-Value Work: 0.220
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA polymerase III, gamma subunit-related protein | 305 | Thermotoga maritima MSB8 | Mutation(s): 3 Gene Names: tm0771 |  | |
UniProt | |||||
Find proteins for Q9WZM9 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WZM9 Go to UniProtKB: Q9WZM9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WZM9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ETX Query on ETX | D [auth A], E [auth A] | 2-ETHOXYETHANOL C4 H10 O2 ZNQVEEAIQZEUHB-UHFFFAOYSA-N |  | ||
| NA Query on NA | B [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | C [auth A] | Unknown ligand FKNQFGJONOIPTF-UHFFFAOYSA-N | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.278
- R-Value Work: 0.220
- R-Value Observed: 0.223
- Space Group: I 4
- Diffraction Data: https://doi.org/10.18430/M32GNO
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 135.56 | α = 90 |
| b = 135.56 | β = 90 |
| c = 35.56 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2006-04-18 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-04-18
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2023-01-25
Changes: Database references, Derived calculations
