Download MendeleyCrystal structure of Aminipeptidase (M18 family) from Thermotoga Maritima
Min, T., Shapiro, L.To be published.
2GLF
Crystal structure of Aminipeptidase (M18 family) from Thermotoga Maritima
- PDB DOI: https://doi.org/10.2210/pdb2GLF/pdb
- Classification: HYDROLASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-04-04 Released: 2006-06-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.239
- R-Value Work: 0.168
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable M18-family aminopeptidase 1 | 450 | Thermotoga maritima | Mutation(s): 13 Gene Names: apeA EC: 3.4.11 |  | |
UniProt | |||||
Find proteins for Q9WYJ9 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WYJ9 Go to UniProtKB: Q9WYJ9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WYJ9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN Query on MN | E [auth A] F [auth A] G [auth B] H [auth B] I [auth C] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.239
- R-Value Work: 0.168
- R-Value Observed: 0.168
- Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 191.225 | α = 90 |
| b = 191.225 | β = 90 |
| c = 191.225 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2006-06-13 Deposition Author(s): Min, T., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-06-13
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
