Download MendeleyCrystal structure of Glutamyl-tRNA(Gln) amidotransferase subunit A (tm1272) from THERMOTOGA MARITIMA at 1.80 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2GI3
Crystal structure of Glutamyl-tRNA(Gln) amidotransferase subunit A (tm1272) from THERMOTOGA MARITIMA at 1.80 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2GI3/pdb
- Classification: LIGASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-03-28 Released: 2006-04-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.201
- R-Value Work: 0.175
- R-Value Observed: 0.176
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutamyl-tRNA(Gln) amidotransferase subunit A | 476 | Thermotoga maritima | Mutation(s): 13 Gene Names: gatA EC: 6.3.5 |  | |
UniProt | |||||
Find proteins for Q9X0Z9 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0Z9 Go to UniProtKB: Q9X0Z9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X0Z9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | E [auth A], F [auth A], G [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| ACT Query on ACT | B [auth A], C [auth A], D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.201
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: P 32 2 1
- Diffraction Data: https://doi.org/10.18430/M32GI3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 131.776 | α = 90 |
| b = 131.776 | β = 90 |
| c = 61.987 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2006-04-11 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-04-11
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2023-01-25
Changes: Database references, Derived calculations
