Download MendeleyX-ray crystal structure of Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea.
Osipiuk, J., Skarina, T., Onopriyenko, O., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
2G84
Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea.
- PDB DOI: https://doi.org/10.2210/pdb2G84/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Nitrosomonas europaea ATCC 19718
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-03-01 Released: 2006-04-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.160
- R-Value Work: 0.128
- R-Value Observed: 0.130
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytidine and deoxycytidylate deaminase zinc-binding region | 197 | Nitrosomonas europaea ATCC 19718 | Mutation(s): 0 Gene Names: NE0047 |  | |
UniProt | |||||
Find proteins for Q82Y41 (Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)) Explore Q82Y41 Go to UniProtKB: Q82Y41 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82Y41 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BME Query on BME | E [auth A], J [auth B] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], H [auth B], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | G [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.160
- R-Value Work: 0.128
- R-Value Observed: 0.130
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.354 | α = 90 |
| b = 73.789 | β = 90 |
| c = 110.37 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| SCALEPACK | data scaling |
| SHELXD | phasing |
| CNS | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2006-04-04 Deposition Author(s): Osipiuk, J., Skarina, T., Onopriyenko, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-04-04
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2021-03-10
Changes: Advisory, Database references, Derived calculations - Version 1.4: 2023-12-06
Changes: Data collection, Database references, Derived calculations
