Download MendeleyCrystal Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase
Wengerter, B.C., Patskovsky, Y., Zhan, C., Ramagopal, U., Milstein, S., Vidal, M., Almo, S.C.To be published.
2G64
Structure of Caenorhabditis elegans 6-pyruvoyl tetrahydropterin synthase
- PDB DOI: https://doi.org/10.2210/pdb2G64/pdb
- Classification: LYASE
- Organism(s): Caenorhabditis elegans
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-02-24 Released: 2006-03-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.219
- R-Value Work: 0.161
- R-Value Observed: 0.162
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative 6-pyruvoyl tetrahydrobiopterin synthase | 140 | Caenorhabditis elegans | Mutation(s): 1 Gene Names: B0041.6 EC: 4.2.3.12 |  | |
UniProt | |||||
Find proteins for O02058 (Caenorhabditis elegans) Explore O02058 Go to UniProtKB: O02058 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O02058 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| NA Query on NA | B [auth A], C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.219
- R-Value Work: 0.161
- R-Value Observed: 0.162
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.792 | α = 90 |
| b = 69.792 | β = 90 |
| c = 160.188 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2006-03-14 Deposition Author(s): Wengerter, B.C., Patskovsky, Y., Zhan, C., Ramagopal, U., Milstein, S., Vidal, M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-03-14
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2021-02-03
Changes: Derived calculations, Structure summary - Version 1.4: 2021-10-20
Changes: Database references - Version 1.5: 2023-08-30
Changes: Data collection, Refinement description
