Download MendeleyThe Crystal Structure of DJ-1 Superfamily Protein Atu0886 from Agrobacterium tumefaciens
Cymborowski, M.T., Wang, S., Chruszcz, M., Shumilin, I., Gu, J., Xu, X., Edwards, A.M., Savchenko, A., Minor, W.To be published.
2FEX
The Crystal Structure of DJ-1 Superfamily Protein Atu0886 from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb2FEX/pdb
- Classification: structural genomics, unknown function
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-12-16 Released: 2006-01-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.199
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| conserved hypothetical protein | 188 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: Atu0886 |  | |
UniProt | |||||
Find proteins for A9CJS5 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CJS5 Go to UniProtKB: A9CJS5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CJS5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth B], F [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | E [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.199
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.411 | α = 90 |
| b = 89.411 | β = 90 |
| c = 163.486 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| ARP/wARP | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2006-01-31 Deposition Author(s): Cymborowski, M.T., Wang, S., Chruszcz, M., Shumilin, I., Gu, J., Xu, X., Edwards, A.M., Savchenko, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-01-31
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2011-10-05
Changes: Structure summary - Version 1.4: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
