Download MendeleyCrystal Structure of YvdT from Bacillus subtilis
Su, X.-D., Yu, Y.-M., Nan, J.To be published.
2F07
Crystal Structure of YvdT from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb2F07/pdb
- Classification: TRANSCRIPTION
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-11-12 Released: 2006-11-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.255
- R-Value Work: 0.234
- R-Value Observed: 0.238
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| YvdT | 197 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for O07001 (Bacillus subtilis (strain 168)) Explore O07001 Go to UniProtKB: O07001 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O07001 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BTB Query on BTB | C [auth A], D [auth B] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.255
- R-Value Work: 0.234
- R-Value Observed: 0.238
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.608 | α = 90 |
| b = 115.608 | β = 90 |
| c = 97.032 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| MAR345 | data collection |
| SCALEPACK | data scaling |
| SHELXS | phasing |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2006-11-21
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2024-03-13
Changes: Data collection, Database references, Derived calculations
