Download MendeleyCrystal Structure of Saccharomyces cerevisiae transcription elongation factors Spt4-Spt5NGN domain
Xu, F., Guo, M., Fang, P., Teng, M., Niu, L.To be published.
2EXU
Crystal Structure of Saccharomyces cerevisiae transcription elongation factors Spt4-Spt5NGN domain
- PDB DOI: https://doi.org/10.2210/pdb2EXU/pdb
- Classification: TRANSCRIPTION
- Organism(s): Saccharomyces cerevisiae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-11-08 Released: 2006-11-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.23 Å
- R-Value Free: 0.221
- R-Value Work: 0.206
- R-Value Observed: 0.207
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcription initiation protein SPT4/SPT5 | 200 | Saccharomyces cerevisiae | Mutation(s): 0 Gene Names: SPT4, SPT5 |  | |
UniProt | |||||
Find proteins for P32914 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32914 Go to UniProtKB: P32914 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P32914 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | E [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EOH Query on EOH | C [auth A], D [auth A] | ETHANOL C2 H6 O LFQSCWFLJHTTHZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.23 Å
- R-Value Free: 0.221
- R-Value Work: 0.206
- R-Value Observed: 0.207
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.801 | α = 90 |
| b = 53.801 | β = 90 |
| c = 177.12 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
Revision History (Full details and data files)
- Version 1.0: 2006-11-08
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.3: 2017-08-23
Changes: Refinement description, Source and taxonomy
