Download MendeleyCrystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix
Mizutani, H., Kunishima, N.To be published.
2EPJ
Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix
- PDB DOI: https://doi.org/10.2210/pdb2EPJ/pdb
- Classification: ISOMERASE
- Organism(s): Aeropyrum pernix K1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-30 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.194
- R-Value Work: 0.165
- R-Value Observed: 0.165
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutamate-1-semialdehyde 2,1-aminomutase | 434 | Aeropyrum pernix K1 | Mutation(s): 0 Gene Names: hemL EC: 5.4.3.8 |  | |
UniProt | |||||
Find proteins for Q9Y9I9 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9Y9I9 Go to UniProtKB: Q9Y9I9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y9I9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PMP Query on PMP | B [auth A] | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE C8 H13 N2 O5 P ZMJGSOSNSPKHNH-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.194
- R-Value Work: 0.165
- R-Value Observed: 0.165
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.006 | α = 90 |
| b = 101.842 | β = 90 |
| c = 148.346 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-02 Deposition Author(s): Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-10-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Refinement description
