Download MendeleyStructural study of Project ID aq_1065 from Aquifex aeolicus VF5
Asada, Y., Kunishima, N.To be published.
2EP7
Structural study of Project ID aq_1065 from Aquifex aeolicus VF5
- PDB DOI: https://doi.org/10.2210/pdb2EP7/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-29 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.215
- R-Value Work: 0.183
- R-Value Observed: 0.185
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyceraldehyde-3-phosphate dehydrogenase | 342 | Aquifex aeolicus | Mutation(s): 0 EC: 1.2.1.12 |  | |
UniProt | |||||
Find proteins for O67161 (Aquifex aeolicus (strain VF5)) Explore O67161 Go to UniProtKB: O67161 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O67161 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | C [auth A], D [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.215
- R-Value Work: 0.183
- R-Value Observed: 0.185
- Space Group: I 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 109.19 | α = 90 |
| b = 115.437 | β = 90 |
| c = 131.484 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| MOLREP | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2007-10-02 Deposition Author(s): Asada, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-10-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
