Download MendeleyStructure of ST1218 protein from Sulfolobus tokodaii
Lokanath, N.K., Pampa, K.J., Kamiya, T., Kunishima, N.To be published.
2EKL
Structure of ST1218 protein from Sulfolobus tokodaii
- PDB DOI: https://doi.org/10.2210/pdb2EKL/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sulfurisphaera tokodaii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-23 Released: 2008-03-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.220
- R-Value Work: 0.188
- R-Value Observed: 0.188
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| D-3-phosphoglycerate dehydrogenase | 313 | Sulfurisphaera tokodaii | Mutation(s): 0 EC: 1.1.1.95 |  | |
UniProt | |||||
Find proteins for Q972A9 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q972A9 Go to UniProtKB: Q972A9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q972A9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.220
- R-Value Work: 0.188
- R-Value Observed: 0.188
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 105.065 | α = 90 |
| b = 59.798 | β = 114.3 |
| c = 60.728 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2008-03-25 Deposition Author(s): Lokanath, N.K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2008-03-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
