Download MendeleyCrystal Structure of Homoserine Dehydrogenase from Thermus thermophilus HB8
Omi, R., Goto, M., Miyahara, I., Hirotsu, K.To be published.
2EJW
Homoserine Dehydrogenase from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb2EJW/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-21 Released: 2008-02-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.238
- R-Value Work: 0.210
- R-Value Observed: 0.210
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Homoserine dehydrogenase | A, B, C [auth E], D [auth F] | 332 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 1.1.1.3 |  |
UniProt | |||||
Find proteins for Q5SL04 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SL04 Go to UniProtKB: Q5SL04 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SL04 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | J [auth B], N [auth E] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| NO3 Query on NO3 | G [auth A], M [auth E], P [auth F] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
| MG Query on MG | E [auth A] F [auth A] H [auth B] I [auth B] K [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.238
- R-Value Work: 0.210
- R-Value Observed: 0.210
- Space Group: C 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 165.439 | α = 90 |
| b = 173.603 | β = 90 |
| c = 97.123 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| ADSC | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2008-02-12 Deposition Author(s): Omi, R., Goto, M., Miyahara, I., Hirotsu, K.
Revision History (Full details and data files)
- Version 1.0: 2008-02-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
