Download MendeleyCrystal Structure Of Uroporphyrinogen Decarboxylase From Aquifex aeolicus
Bagautdinov, B., Kunishima, N.To be published.
2EJA
Crystal Structure Of Uroporphyrinogen Decarboxylase From Aquifex aeolicus
- PDB DOI: https://doi.org/10.2210/pdb2EJA/pdb
- Classification: LYASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-16 Released: 2008-03-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.270
- R-Value Work: 0.205
- R-Value Observed: 0.205
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uroporphyrinogen decarboxylase | 338 | Aquifex aeolicus | Mutation(s): 0 EC: 4.1.1.37 |  | |
UniProt | |||||
Find proteins for O66667 (Aquifex aeolicus (strain VF5)) Explore O66667 Go to UniProtKB: O66667 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O66667 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.270
- R-Value Work: 0.205
- R-Value Observed: 0.205
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.473 | α = 90 |
| b = 80.403 | β = 90 |
| c = 128.999 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| AMoRE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2008-03-18 Deposition Author(s): Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2008-03-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
