2EIG
Lotus tetragonolobus seed lectin (Isoform)
- PDB DOI: https://doi.org/10.2210/pdb2EIG/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Lotus tetragonolobus
- Mutation(s): No
- Deposited: 2007-03-13 Released: 2008-03-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.251
- R-Value Work: 0.188
- R-Value Observed: 0.191
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| lectin | 234 | Lotus tetragonolobus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for D0VWW1 (Lotus tetragonolobus) Explore D0VWW1 Go to UniProtKB: D0VWW1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0VWW1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | E [auth A], H [auth B], K [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| MN Query on MN | F [auth A], I [auth B], L [auth C], N [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA Query on CA | G [auth A], J [auth B], M [auth C], O [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.251
- R-Value Work: 0.188
- R-Value Observed: 0.191
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.892 | α = 90 |
| b = 65.835 | β = 92 |
| c = 102.537 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-03-04 Deposition Author(s): Moreno, F.B.M.B., Vicoti, M.M., Abrego, J.R.B., de Oliveira, T.M., Bezerra, G.A., Cavada, B.S., Filgueira de Azevedo Jr., W.
Revision History (Full details and data files)
- Version 1.0: 2008-03-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-10-11
Changes: Advisory, Refinement description - Version 1.3: 2018-01-31
Changes: Experimental preparation - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Structure summary
