Download MendeleyCrystal structure analysis of putative oxidoreductase from Thermus thermophilus HB8
Kamiya, N., Hikima, T., Ebihara, A., Inoue, Y.To be published.
2EHD
Crystal Structure Analysis of Oxidoreductase
- PDB DOI: https://doi.org/10.2210/pdb2EHD/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-06 Released: 2008-03-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.255
- R-Value Work: 0.226
- R-Value Observed: 0.229
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase, short-chain dehydrogenase/reductase family | 234 | Thermus thermophilus HB8 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q5SK86 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SK86 Go to UniProtKB: Q5SK86 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SK86 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CO Query on CO | C [auth A], D [auth B] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.255
- R-Value Work: 0.226
- R-Value Observed: 0.229
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.02 | α = 90 |
| b = 104.02 | β = 90 |
| c = 105.93 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| MOLREP | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-03-11 Deposition Author(s): Kamiya, N., Hikima, T., Ebihara, A., Inoue, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2008-03-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2014-11-12
Changes: Structure summary - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
